Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ggnbp1Gametogenetin binding protein 1. (356 aa)    
Predicted Functional Partners:
Plcb1
Phospholipase C, beta 1.
    
  0.839
Atxn2
Ataxin 2.
     
  0.838
Plcd4
Phospholipase C, delta 4.
     
  0.838
Plcd3
Phospholipase C, delta 3.
     
  0.838
Pcna
Proliferating cell nuclear antigen.
   
 0.782
Itpr3
Inositol 1,4,5-triphosphate receptor 3.
     
  0.769
Itpr2
Inositol 1,4,5-triphosphate receptor 2.
     
  0.769
Prkca
Protein kinase C, alpha.
     
  0.769
Prkcb
Protein kinase C, beta.
     
  0.769
Trip12
Thyroid hormone receptor interactor 12.
    
 
 0.759
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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