Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
B230118H07RikRIKEN cDNA B230118H07 gene. (228 aa)    
Predicted Functional Partners:
Ift122
Intraflagellar transport 122.
    
 
 0.977
Ift43
Intraflagellar transport 43.
    
 
 0.975
Wdr19
WD repeat domain 19.
    
 
 0.956
Wdr35
WD repeat domain 35.
    
   0.954
Ift140
Intraflagellar transport 140.
    
   0.954
Ube2s
Ubiquitin-conjugating enzyme E2S.
    
   0.565
Gtf2ird1
General transcription factor II I repeat domain-containing 1.
      
 0.537
Abhd2
Abhydrolase domain containing 2.
      
 0.515
Zfp518b
Zinc finger protein 518B.
      
 0.489
Fam102a
Family with sequence similarity 102, member A.
      
 0.477
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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