H2ac19 protein (Mus spicilegus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

H2ac19

H2A clustered histone 19. (130 aa)

Predicted Functional Partners:

H2bc1

0.953

H2bc18

0.942

ENSMSIP00000001525

0.926

ENSMSIP00000025821

0.926

H2bu2

0.925

ENSMSIP00000002609

0.909

Mysm1

0.905

ENSMSIP00000015991

0.891

ENSMSIP00000002627

0.890

ENSMSIP00000002708

0.890

Your Current Organism:

Mus spicilegus

NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMSIP00000001525	ENSMSIP00000002609	ENSMSIP00000001525	ENSMSIP00000002609	annotation not available	annotation not available	0.975
ENSMSIP00000001525	ENSMSIP00000002627	ENSMSIP00000001525	ENSMSIP00000002627	annotation not available	annotation not available	0.866
ENSMSIP00000001525	ENSMSIP00000002708	ENSMSIP00000001525	ENSMSIP00000002708	annotation not available	annotation not available	0.866
ENSMSIP00000001525	ENSMSIP00000015991	ENSMSIP00000001525	ENSMSIP00000015991	annotation not available	annotation not available	0.862
ENSMSIP00000001525	ENSMSIP00000025821	ENSMSIP00000001525	ENSMSIP00000025821	annotation not available	annotation not available	0.943
ENSMSIP00000001525	H2ac19	ENSMSIP00000001525	ENSMSIP00000005320	annotation not available	H2A clustered histone 19.	0.926
ENSMSIP00000001525	H2bc1	ENSMSIP00000001525	ENSMSIP00000033390	annotation not available	H2B clustered histone 1.	0.970
ENSMSIP00000001525	H2bc18	ENSMSIP00000001525	ENSMSIP00000035317	annotation not available	H2B clustered histone 18.	0.944
ENSMSIP00000001525	H2bu2	ENSMSIP00000001525	ENSMSIP00000025830	annotation not available	H2B.U histone 2.	0.943
ENSMSIP00000001525	Mysm1	ENSMSIP00000001525	ENSMSIP00000002006	annotation not available	Myb-like, SWIRM and MPN domains 1.	0.868
ENSMSIP00000002609	ENSMSIP00000001525	ENSMSIP00000002609	ENSMSIP00000001525	annotation not available	annotation not available	0.975
ENSMSIP00000002609	ENSMSIP00000002627	ENSMSIP00000002609	ENSMSIP00000002627	annotation not available	annotation not available	0.919
ENSMSIP00000002609	ENSMSIP00000002708	ENSMSIP00000002609	ENSMSIP00000002708	annotation not available	annotation not available	0.919
ENSMSIP00000002609	ENSMSIP00000015991	ENSMSIP00000002609	ENSMSIP00000015991	annotation not available	annotation not available	0.919
ENSMSIP00000002609	ENSMSIP00000025821	ENSMSIP00000002609	ENSMSIP00000025821	annotation not available	annotation not available	0.878
ENSMSIP00000002609	H2ac19	ENSMSIP00000002609	ENSMSIP00000005320	annotation not available	H2A clustered histone 19.	0.909
ENSMSIP00000002609	H2bc1	ENSMSIP00000002609	ENSMSIP00000033390	annotation not available	H2B clustered histone 1.	0.961
ENSMSIP00000002609	H2bc18	ENSMSIP00000002609	ENSMSIP00000035317	annotation not available	H2B clustered histone 18.	0.985
ENSMSIP00000002609	H2bu2	ENSMSIP00000002609	ENSMSIP00000025830	annotation not available	H2B.U histone 2.	0.878
ENSMSIP00000002609	Mysm1	ENSMSIP00000002609	ENSMSIP00000002006	annotation not available	Myb-like, SWIRM and MPN domains 1.	0.830