Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Col11a1Collagen, type XI, alpha 1. (1804 aa)    
Predicted Functional Partners:
Col2a1
Collagen, type II, alpha 1.
  
0.941
Col6a2
Collagen, type VI, alpha 2.
   
 0.940
Col5a2
Collagen, type V, alpha 2.
   
0.935
Col6a1
Collagen, type VI, alpha 1.
   
 0.899
Col16a1
Collagen, type XVI, alpha 1.
   
 0.892
Serpinh1
Serine (or cysteine) peptidase inhibitor, clade H, member 1.
   
 0.743
Itga1
Integrin alpha 1.
    
 0.724
Col10a1
Collagen, type X, alpha 1.
   
 0.721
Ak9
Adenylate kinase 9.
    
   0.721
Itgav
Integrin alpha V.
    
 0.717
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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