Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Spata4Spermatogenesis associated 4. (336 aa)    
Predicted Functional Partners:
Spata17
Spermatogenesis associated 17.
   
 
 0.917
Spag6
Sperm associated antigen 6.
   
 0.900
Spag6l
Sperm associated antigen 6-like.
   
 0.900
Spag17
Sperm associated antigen 17.
    
 
 0.871
Zcchc3
Zinc finger, CCHC domain containing 3.
      
 0.854
Gmcl1
Germ cell-less, spermatogenesis associated 1.
    
 
 0.851
Wdr90
WD repeat domain 90.
    
   0.838
ENSMSIP00000034910
annotation not available
    
 
 0.825
Ccdc189
Coiled-coil domain containing 189.
    
 
 0.823
Mycbpap
MYCBP associated protein.
   
 
 0.816
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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