Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cdc42se1CDC42 small effector 1. (80 aa)    
Predicted Functional Partners:
Cdc42
Cell division cycle 42.
    
 
 0.842
Cdc42ep4
CDC42 effector protein (Rho GTPase binding) 4.
      
 0.774
Cdc42ep3
CDC42 effector protein (Rho GTPase binding) 3.
      
 0.715
Baiap2l1
BAI1-associated protein 2-like 1.
      
 0.713
Cdc42bpb
CDC42 binding protein kinase beta.
      
 0.670
Flii
Flightless I actin binding protein.
      
 0.601
Creb3
cAMP responsive element binding protein 3.
   
  
 0.555
Baiap2
Brain-specific angiogenesis inhibitor 1-associated protein 2.
      
 0.550
Sema6c
Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C.
      
 0.543
Syngap1
Synaptic Ras GTPase activating protein 1 homolog (rat).
      
 0.538
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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