STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Usb1U6 snRNA biogenesis 1. (267 aa)    
Predicted Functional Partners:
Prpf19
pre-mRNA processing factor 19.
    
   0.909
Xab2
XPA binding protein 2.
    
 
 0.885
Gpatch1
G patch domain containing 1.
    
   0.808
Ppie
Peptidylprolyl isomerase E (cyclophilin E).
    
   0.796
ENSMSIP00000010781
annotation not available
    
   0.787
ENSMSIP00000013742
annotation not available
    
   0.787
Dhx35
DEAH (Asp-Glu-Ala-His) box polypeptide 35.
    
   0.787
ENSMSIP00000032381
annotation not available
    
   0.787
Cwf19l2
CWF19-like 2, cell cycle control (S. pombe).
    
   0.786
Snw1
SNW domain containing 1.
    
 
 0.786
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.