Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ubr3Ubiquitin protein ligase E3 component n-recognin 3. (1849 aa)    
Predicted Functional Partners:
Hectd1
HECT domain E3 ubiquitin protein ligase 1.
   
  
 0.847
ENSMSIP00000003529
annotation not available
   
    0.798
ENSMSIP00000012727
annotation not available
    
 
 0.723
Ube2b
Ubiquitin-conjugating enzyme E2B.
    
 
 0.723
ENSMSIP00000027198
annotation not available
    
 
 0.723
Trip12
Thyroid hormone receptor interactor 12.
   
 
 0.722
Hoxb7
Homeobox B7.
    
   0.664
Arhgap4
Rho GTPase activating protein 4.
      
 0.640
Fahd1
Fumarylacetoacetate hydrolase domain containing 1.
    
 
 0.616
Birc6
Baculoviral IAP repeat-containing 6.
   
 
 0.602
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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