Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ddx28DEAD (Asp-Glu-Ala-Asp) box polypeptide 28. (540 aa)    
Predicted Functional Partners:
Ngdn
Neuroguidin, EIF4E binding protein.
   
 0.986
Fastkd2
FAST kinase domains 2.
   
 
 0.975
Mrm3
Mitochondrial rRNA methyltransferase 3.
  
 
 0.974
Rpusd4
RNA pseudouridylate synthase domain containing 4.
  
 
 0.966
Trub2
TruB pseudouridine (psi) synthase family member 2.
  
 
 0.962
Wdr46
WD repeat domain 46.
   
 0.949
Mterf3
Mitochondrial transcription termination factor 3.
    
 
 0.938
Esf1
ESF1 nucleolar pre-rRNA processing protein homolog.
   
 
 0.937
Malsu1
Mitochondrial assembly of ribosomal large subunit 1.
    
 
 0.935
Ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
  
0.930
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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