Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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Textmining
[Homology]
Score
Atp13a1ATPase type 13A1. (1200 aa)    
Predicted Functional Partners:
Emc1
ER membrane protein complex subunit 1.
   
 
 0.878
Sec63
SEC63-like (S. cerevisiae).
   
 
 0.866
ENSMSIP00000008854
annotation not available
    
 
 0.851
Wrb
Tryptophan rich basic protein.
    
 
 0.851
Dlk1
Delta like non-canonical Notch ligand 1.
    
  0.798
Zmpste24
Zinc metallopeptidase, STE24.
    
 
 0.798
ENSMSIP00000013887
annotation not available
   
   0.796
Spcs2
Signal peptidase complex subunit 2 homolog (S. cerevisiae).
   
   0.796
Pgk1
Phosphoglycerate kinase 1.
    
 
 0.793
Pgk2
Phosphoglycerate kinase 2.
    
 
 0.793
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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