ENSMSIP00000006902 protein (Mus spicilegus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSMSIP00000006902

annotation not available (439 aa)

Predicted Functional Partners:

Rnf34

0.938

Efcab7

0.905

ENSMSIP00000005017

0.877

ENSMSIP00000031034

0.877

ENSMSIP00000005143

0.830

ENSMSIP00000006203

0.830

Ube2d2a

0.830

ENSMSIP00000006862

0.830

ENSMSIP00000019209

0.830

Ube2d2b

0.830

Your Current Organism:

Mus spicilegus

NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMSIP00000005017	ENSMSIP00000006902	ENSMSIP00000005017	ENSMSIP00000006902	annotation not available	annotation not available	0.877
ENSMSIP00000005017	Rnf34	ENSMSIP00000005017	ENSMSIP00000016501	annotation not available	Ring finger protein 34.	0.778
ENSMSIP00000005143	ENSMSIP00000006902	ENSMSIP00000005143	ENSMSIP00000006902	annotation not available	annotation not available	0.830
ENSMSIP00000005143	Rnf34	ENSMSIP00000005143	ENSMSIP00000016501	annotation not available	Ring finger protein 34.	0.636
ENSMSIP00000006203	ENSMSIP00000006902	ENSMSIP00000006203	ENSMSIP00000006902	annotation not available	annotation not available	0.830
ENSMSIP00000006203	Rnf34	ENSMSIP00000006203	ENSMSIP00000016501	annotation not available	Ring finger protein 34.	0.636
ENSMSIP00000006862	ENSMSIP00000006902	ENSMSIP00000006862	ENSMSIP00000006902	annotation not available	annotation not available	0.830
ENSMSIP00000006862	Rnf34	ENSMSIP00000006862	ENSMSIP00000016501	annotation not available	Ring finger protein 34.	0.636
ENSMSIP00000006902	ENSMSIP00000005017	ENSMSIP00000006902	ENSMSIP00000005017	annotation not available	annotation not available	0.877
ENSMSIP00000006902	ENSMSIP00000005143	ENSMSIP00000006902	ENSMSIP00000005143	annotation not available	annotation not available	0.830
ENSMSIP00000006902	ENSMSIP00000006203	ENSMSIP00000006902	ENSMSIP00000006203	annotation not available	annotation not available	0.830
ENSMSIP00000006902	ENSMSIP00000006862	ENSMSIP00000006902	ENSMSIP00000006862	annotation not available	annotation not available	0.830
ENSMSIP00000006902	ENSMSIP00000019209	ENSMSIP00000006902	ENSMSIP00000019209	annotation not available	annotation not available	0.830
ENSMSIP00000006902	ENSMSIP00000031034	ENSMSIP00000006902	ENSMSIP00000031034	annotation not available	annotation not available	0.877
ENSMSIP00000006902	Efcab7	ENSMSIP00000006902	ENSMSIP00000031134	annotation not available	EF-hand calcium binding domain 7.	0.905
ENSMSIP00000006902	Rnf34	ENSMSIP00000006902	ENSMSIP00000016501	annotation not available	Ring finger protein 34.	0.938
ENSMSIP00000006902	Ube2d2a	ENSMSIP00000006902	ENSMSIP00000006538	annotation not available	Ubiquitin-conjugating enzyme E2D 2A.	0.830
ENSMSIP00000006902	Ube2d2b	ENSMSIP00000006902	ENSMSIP00000023744	annotation not available	Ubiquitin-conjugating enzyme E2D 2B.	0.830
ENSMSIP00000019209	ENSMSIP00000006902	ENSMSIP00000019209	ENSMSIP00000006902	annotation not available	annotation not available	0.830
ENSMSIP00000019209	Rnf34	ENSMSIP00000019209	ENSMSIP00000016501	annotation not available	Ring finger protein 34.	0.636