Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Hoxd10Homeobox D10. (340 aa)    
Predicted Functional Partners:
Hoxa9
Homeobox A9.
   
  
 0.938
Col2a1
Collagen, type II, alpha 1.
      
 0.872
Hoxa2
Homeobox A2.
   
 
 0.851
ENSMSIP00000011263
annotation not available
    
 
 0.843
Hoxd9
Homeobox D9.
   
  
 0.836
Hoxb2
Homeobox B2.
   
 
 0.744
Hoxd13
Homeobox D13.
   
  
 0.644
Hoxd11
Homeobox D11.
   
  
 0.613
Hoxa11
Homeobox A11.
   
  
 0.613
Hoxc11
Homeobox C11.
   
  
 0.613
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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