Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Hoxd12Homeobox D12. (268 aa)    
Predicted Functional Partners:
Irx2
Iroquois homeobox 2.
    
 
 0.622
ENSMSIP00000000007
annotation not available
    
   0.583
ENSMSIP00000003735
annotation not available
    
   0.583
Mafk
V-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian).
    
   0.583
Sall3
Spalt like transcription factor 3.
    
 
 0.582
Sall1
Spalt like transcription factor 1.
    
 
 0.582
Idh2
Isocitrate dehydrogenase 2 (NADP+), mitochondrial.
      
 0.577
ENSMSIP00000026228
annotation not available
    
 
 0.553
Spert
Spermatid associated.
      
 0.536
Tbx5
T-box 5.
    
 
 0.526
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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