Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Asphd2Aspartate beta-hydroxylase domain containing 2. (343 aa)    
Predicted Functional Partners:
Fam20b
Family with sequence similarity 20, member B.
    
   0.792
Acbd6
acyl-Coenzyme A binding domain containing 6.
      
 0.710
Tmem53
Transmembrane protein 53.
      
 0.709
B3glct
Beta-3-glucosyltransferase.
      
 0.666
ENSMSIP00000008280
annotation not available
     
 0.586
ENSMSIP00000007024
annotation not available
      
 0.572
Tor1a
Torsin family 1, member A (torsin A).
    
 
 0.559
Tmem109
Transmembrane protein 109.
      
 0.544
AI467606
Expressed sequence AI467606.
      
 0.531
ENSMSIP00000000437
annotation not available
      
 0.505
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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