Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Prpf3pre-mRNA processing factor 3. (682 aa)    
Predicted Functional Partners:
Prpf6
pre-mRNA splicing factor 6.
   
 0.999
Prpf4
pre-mRNA processing factor 4.
   
 0.999
Prpf31
pre-mRNA processing factor 31.
   
 0.998
Sart1
Squamous cell carcinoma antigen recognized by T cells 1.
   
 0.996
Prpf8
pre-mRNA processing factor 8.
   
 0.994
Ddx23
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.
   
 0.992
Eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 0.987
Ppih
Peptidyl prolyl isomerase H.
    
 0.986
Gm7879
Predicted pseudogene 7879.
    
 0.986
ENSMSIP00000019141
annotation not available
    
 0.986
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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