STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sfxn1Sideroflexin 1. (322 aa)    
Predicted Functional Partners:
Runx1t1
RUNX1 translocation partner 1.
   
    0.815
Cbfa2t3
CBFA2/RUNX1 translocation partner 3.
   
    0.774
ENSMSIP00000004158
annotation not available
      
 0.602
Rab11a
RAB11A, member RAS oncogene family.
    
 0.597
Rab11b
RAB11B, member RAS oncogene family.
    
 0.597
Slc25a38
Solute carrier family 25, member 38.
      
 0.541
Cbfa2t2
CBFA2/RUNX1 translocation partner 2.
   
    0.532
Rab25
RAB25, member RAS oncogene family.
    
 0.490
Rabl2
RAB, member RAS oncogene family-like 2.
    
 0.419
Mthfd2l
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like.
      
 0.412
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.