Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Fam170aFamily with sequence similarity 170, member A. (351 aa)    
Predicted Functional Partners:
Csnk1a1
Casein kinase 1, alpha 1.
    
   0.895
Spc24
SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae).
    
   0.894
Vapa
Vesicle-associated membrane protein, associated protein A.
    
   0.880
Spc25
SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae).
    
   0.846
Zfp358
Zinc finger protein 358.
    
   0.817
Usp7
Ubiquitin specific peptidase 7.
    
   0.772
Vapb
Vesicle-associated membrane protein, associated protein B and C.
    
   0.752
ENSMSIP00000011319
annotation not available
    
   0.719
Ndc80
NDC80 kinetochore complex component.
    
   0.716
Tekt4
Tektin 4.
   
  
 0.594
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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