STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Stra6Stimulated by retinoic acid gene 6. (670 aa)    
Predicted Functional Partners:
ENSMSIP00000001393
annotation not available
     
 0.980
ENSMSIP00000017764
annotation not available
     
 0.891
Ttr
Transthyretin.
     
 0.849
Wdr90
WD repeat domain 90.
    
 0.722
Rdh10
Retinol dehydrogenase 10 (all-trans).
    
 0.671
Cyp26a1
Cytochrome P450, family 26, subfamily a, polypeptide 1.
    
 0.633
Lrat
Lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase).
      
 0.617
Gak
Cyclin G associated kinase.
    
 0.617
Cyp26b1
Cytochrome P450, family 26, subfamily b, polypeptide 1.
    
 0.605
Rars
arginyl-tRNA synthetase.
   
 
 0.599
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.