STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lhx8LIM homeobox protein 8. (367 aa)    
Predicted Functional Partners:
Ldb1
LIM domain binding 1.
    
 0.916
Ldb2
LIM domain binding 2.
    
 0.855
Nobox
NOBOX oogenesis homeobox.
      
 0.833
ENSMSIP00000018392
annotation not available
   
 0.781
Msx1
Msh homeobox 1.
    
 
 0.661
Hoxc9
Homeobox C9.
    
 
 0.610
Sohlh1
Spermatogenesis and oogenesis specific basic helix-loop-helix 1.
      
 0.602
Nkx2-1
NK2 homeobox 1.
   
 
 0.597
Zic1
Zinc finger protein of the cerebellum 1.
    
 
 0.595
Sohlh2
Spermatogenesis and oogenesis specific basic helix-loop-helix 2.
      
 0.583
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.