STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rrp9RRP9, small subunit (SSU) processome component, homolog (yeast). (475 aa)    
Predicted Functional Partners:
Wdr36
WD repeat domain 36.
   
 0.999
Fbl
Fibrillarin.
   
 0.999
Wdr3
WD repeat domain 3.
   
0.999
Noc4l
NOC4 like.
   
 0.999
Utp4
UTP4 small subunit processome component.
   
 0.999
Bms1
BMS1, ribosome biogenesis factor.
   
 0.999
Utp18
UTP18 small subunit processome component.
   
 0.999
Dcaf13
DDB1 and CUL4 associated factor 13.
   
 0.999
Nol6
Nucleolar protein family 6 (RNA-associated).
   
 0.999
Nat10
N-acetyltransferase 10.
   
 0.999
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.