ENSMSIP00000017302 protein (Mus spicilegus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSMSIP00000017302

annotation not available (462 aa)

Predicted Functional Partners:

Utp4

0.805

Wdr36

0.726

Pwp2

0.698

Prnp

0.670

Tmem53

0.617

Pum3

0.606

Utp25

0.606

Tbl3

0.604

Wdr3

0.603

Tsr1

0.603

Your Current Organism:

Mus spicilegus

NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMSIP00000017302	Prnp	ENSMSIP00000017302	ENSMSIP00000023928	annotation not available	Prion protein.	0.670
ENSMSIP00000017302	Pum3	ENSMSIP00000017302	ENSMSIP00000027488	annotation not available	Pumilio RNA-binding family member 3.	0.606
ENSMSIP00000017302	Pwp2	ENSMSIP00000017302	ENSMSIP00000031464	annotation not available	PWP2 periodic tryptophan protein homolog (yeast).	0.698
ENSMSIP00000017302	Tbl3	ENSMSIP00000017302	ENSMSIP00000009113	annotation not available	Transducin (beta)-like 3.	0.604
ENSMSIP00000017302	Tmem53	ENSMSIP00000017302	ENSMSIP00000017104	annotation not available	Transmembrane protein 53.	0.617
ENSMSIP00000017302	Tsr1	ENSMSIP00000017302	ENSMSIP00000028034	annotation not available	TSR1 20S rRNA accumulation.	0.603
ENSMSIP00000017302	Utp25	ENSMSIP00000017302	ENSMSIP00000028654	annotation not available	UTP25 small subunit processome component.	0.606
ENSMSIP00000017302	Utp4	ENSMSIP00000017302	ENSMSIP00000005601	annotation not available	UTP4 small subunit processome component.	0.805
ENSMSIP00000017302	Wdr3	ENSMSIP00000017302	ENSMSIP00000004157	annotation not available	WD repeat domain 3.	0.603
ENSMSIP00000017302	Wdr36	ENSMSIP00000017302	ENSMSIP00000003019	annotation not available	WD repeat domain 36.	0.726
Prnp	ENSMSIP00000017302	ENSMSIP00000023928	ENSMSIP00000017302	Prion protein.	annotation not available	0.670
Pum3	ENSMSIP00000017302	ENSMSIP00000027488	ENSMSIP00000017302	Pumilio RNA-binding family member 3.	annotation not available	0.606
Pum3	Pwp2	ENSMSIP00000027488	ENSMSIP00000031464	Pumilio RNA-binding family member 3.	PWP2 periodic tryptophan protein homolog (yeast).	0.887
Pum3	Tbl3	ENSMSIP00000027488	ENSMSIP00000009113	Pumilio RNA-binding family member 3.	Transducin (beta)-like 3.	0.933
Pum3	Tsr1	ENSMSIP00000027488	ENSMSIP00000028034	Pumilio RNA-binding family member 3.	TSR1 20S rRNA accumulation.	0.893
Pum3	Utp25	ENSMSIP00000027488	ENSMSIP00000028654	Pumilio RNA-binding family member 3.	UTP25 small subunit processome component.	0.883
Pum3	Utp4	ENSMSIP00000027488	ENSMSIP00000005601	Pumilio RNA-binding family member 3.	UTP4 small subunit processome component.	0.895
Pum3	Wdr3	ENSMSIP00000027488	ENSMSIP00000004157	Pumilio RNA-binding family member 3.	WD repeat domain 3.	0.901
Pum3	Wdr36	ENSMSIP00000027488	ENSMSIP00000003019	Pumilio RNA-binding family member 3.	WD repeat domain 36.	0.934
Pwp2	ENSMSIP00000017302	ENSMSIP00000031464	ENSMSIP00000017302	PWP2 periodic tryptophan protein homolog (yeast).	annotation not available	0.698