STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snai3Snail family zinc finger 3. (287 aa)    
Predicted Functional Partners:
Kdm1a
Lysine (K)-specific demethylase 1A.
    
 0.799
Kpnb1
Karyopherin (importin) beta 1.
    
   0.783
Gse1
Genetic suppressor element 1, coiled-coil protein.
    
   0.595
Twist1
Twist basic helix-loop-helix transcription factor 1.
   
  
 0.552
Twist2
Twist basic helix-loop-helix transcription factor 2.
   
  
 0.552
Cdh1
Cadherin 1.
      
 0.520
ENSMSIP00000024754
annotation not available
  
   
0.519
Fbxl14
F-box and leucine-rich repeat protein 14.
   
 
 0.512
Tbx19
T-box 19.
    
 0.499
T
Brachyury, T-box transcription factor T.
    
 0.499
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.