Psmg1 protein (Mus spicilegus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Psmg1

Proteasome (prosome, macropain) assembly chaperone 1. (289 aa)

Predicted Functional Partners:

Mrps15

0.995

Psmg2

0.995

ENSMSIP00000022539

0.992

Mrps12

0.989

Mrps5

0.989

Mrps25

0.988

Mrps11

0.988

Mrps23

0.988

Mrps35

0.986

ENSMSIP00000038057

0.985

Your Current Organism:

Mus spicilegus

NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMSIP00000022539	ENSMSIP00000038057	ENSMSIP00000022539	ENSMSIP00000038057	annotation not available	annotation not available	0.999
ENSMSIP00000022539	Mrps11	ENSMSIP00000022539	ENSMSIP00000021969	annotation not available	Mitochondrial ribosomal protein S11.	0.999
ENSMSIP00000022539	Mrps12	ENSMSIP00000022539	ENSMSIP00000000079	annotation not available	Mitochondrial ribosomal protein S12.	0.999
ENSMSIP00000022539	Mrps15	ENSMSIP00000022539	ENSMSIP00000018639	annotation not available	Mitochondrial ribosomal protein S15.	0.999
ENSMSIP00000022539	Mrps23	ENSMSIP00000022539	ENSMSIP00000027056	annotation not available	Mitochondrial ribosomal protein S23.	0.995
ENSMSIP00000022539	Mrps25	ENSMSIP00000022539	ENSMSIP00000011331	annotation not available	Mitochondrial ribosomal protein S25.	0.998
ENSMSIP00000022539	Mrps35	ENSMSIP00000022539	ENSMSIP00000015866	annotation not available	Mitochondrial ribosomal protein S35.	0.998
ENSMSIP00000022539	Mrps5	ENSMSIP00000022539	ENSMSIP00000022256	annotation not available	Mitochondrial ribosomal protein S5.	0.998
ENSMSIP00000022539	Psmg1	ENSMSIP00000022539	ENSMSIP00000018403	annotation not available	Proteasome (prosome, macropain) assembly chaperone 1.	0.992
ENSMSIP00000038057	ENSMSIP00000022539	ENSMSIP00000038057	ENSMSIP00000022539	annotation not available	annotation not available	0.999
ENSMSIP00000038057	Mrps11	ENSMSIP00000038057	ENSMSIP00000021969	annotation not available	Mitochondrial ribosomal protein S11.	0.999
ENSMSIP00000038057	Mrps12	ENSMSIP00000038057	ENSMSIP00000000079	annotation not available	Mitochondrial ribosomal protein S12.	0.999
ENSMSIP00000038057	Mrps15	ENSMSIP00000038057	ENSMSIP00000018639	annotation not available	Mitochondrial ribosomal protein S15.	0.999
ENSMSIP00000038057	Mrps23	ENSMSIP00000038057	ENSMSIP00000027056	annotation not available	Mitochondrial ribosomal protein S23.	0.994
ENSMSIP00000038057	Mrps25	ENSMSIP00000038057	ENSMSIP00000011331	annotation not available	Mitochondrial ribosomal protein S25.	0.999
ENSMSIP00000038057	Mrps35	ENSMSIP00000038057	ENSMSIP00000015866	annotation not available	Mitochondrial ribosomal protein S35.	0.998
ENSMSIP00000038057	Mrps5	ENSMSIP00000038057	ENSMSIP00000022256	annotation not available	Mitochondrial ribosomal protein S5.	0.998
ENSMSIP00000038057	Psmg1	ENSMSIP00000038057	ENSMSIP00000018403	annotation not available	Proteasome (prosome, macropain) assembly chaperone 1.	0.985
Mrps11	ENSMSIP00000022539	ENSMSIP00000021969	ENSMSIP00000022539	Mitochondrial ribosomal protein S11.	annotation not available	0.999
Mrps11	ENSMSIP00000038057	ENSMSIP00000021969	ENSMSIP00000038057	Mitochondrial ribosomal protein S11.	annotation not available	0.999