STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Scaf4SR-related CTD-associated factor 4. (1210 aa)    
Predicted Functional Partners:
Setx
Senataxin.
   
 0.991
Rnmt
RNA (guanine-7-) methyltransferase.
   
 0.971
Ncbp1
Nuclear cap binding protein subunit 1.
   
 0.971
Pcf11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.948
ENSMSIP00000038257
annotation not available
   
 0.932
Polr2a
Polymerase (RNA) II (DNA directed) polypeptide A.
   
 
 0.931
Cpsf3
Cleavage and polyadenylation specificity factor 3.
   
 0.911
Cpsf2
Cleavage and polyadenylation specific factor 2.
   
 0.909
Cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.907
ENSMSIP00000003144
annotation not available
   
 0.883
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.