STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gfi1Growth factor independent 1 transcription repressor. (489 aa)    
Predicted Functional Partners:
Kdm1a
Lysine (K)-specific demethylase 1A.
    
 0.897
ENSMSIP00000027240
annotation not available
    
 0.893
Gata2
GATA binding protein 2.
   
 0.800
Cebpe
CCAAT/enhancer binding protein (C/EBP), epsilon.
    
 0.790
Ehmt2
Euchromatic histone lysine N-methyltransferase 2.
   
 0.735
Atxn1
Ataxin 1.
    
 
 0.723
Spi1
Spleen focus forming virus (SFFV) proviral integration oncogene.
    
 0.695
ENSMSIP00000001845
annotation not available
    
 0.690
ENSMSIP00000029555
annotation not available
    
 0.690
ENSMSIP00000037207
annotation not available
    
 0.690
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.