STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ripk4Receptor-interacting serine-threonine kinase 4. (805 aa)    
Predicted Functional Partners:
Col22a1
Collagen, type XXII, alpha 1.
   
 0.964
ENSMSIP00000009114
annotation not available
   
 0.940
Uty
Ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome.
   
 0.940
Kdm6a
Lysine (K)-specific demethylase 6A.
   
 0.940
Kdm6b
KDM1 lysine (K)-specific demethylase 6B.
   
 0.940
ENSMSIP00000018037
annotation not available
   
 0.939
ENSMSIP00000022070
annotation not available
   
 0.934
Birc6
Baculoviral IAP repeat-containing 6.
   
 0.932
F12
Coagulation factor XII (Hageman factor).
   
 0.925
Hgfac
Hepatocyte growth factor activator.
   
 0.925
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.