STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Trmt6tRNA methyltransferase 6. (497 aa)    
Predicted Functional Partners:
Trmt61a
tRNA methyltransferase 61A.
   
 0.999
ENSMSIP00000022506
annotation not available
   
 
 0.991
Wdr4
WD repeat domain 4.
   
 0.970
Trmt10c
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
 
 0.970
Trmt11
tRNA methyltransferase 11.
   
 0.965
Trmt10a
tRNA methyltransferase 10A.
   
 
 0.940
ENSMSIP00000023865
annotation not available
   
 
 0.940
Bud23
BUD23, rRNA methyltransferase and ribosome maturation factor.
   
 0.936
ENSMSIP00000000683
annotation not available
   
  
 0.933
Gnl2
Guanine nucleotide binding protein-like 2 (nucleolar).
   
  
 0.933
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.