STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Yipf4Yip1 domain family, member 4. (246 aa)    
Predicted Functional Partners:
Yipf3
Yip1 domain family, member 3.
    
 
 0.920
Yif1a
Yip1 interacting factor homolog A (S. cerevisiae).
    
 
 0.913
Yipf2
Yip1 domain family, member 2.
    
 
 0.909
Yipf1
Yip1 domain family, member 1.
    
 
 0.888
Yif1b
Yip1 interacting factor homolog B (S. cerevisiae).
    
 
 0.877
Clu
Clusterin.
   
 
  0.839
Apoe
Apolipoprotein E.
   
 
  0.835
Spata5
Spermatogenesis associated 5.
    
 0.744
ENSMSIP00000024040
annotation not available
    
 0.744
ENSMSIP00000037867
annotation not available
    
 0.744
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.