STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pdx1Pancreatic and duodenal homeobox 1. (284 aa)    
Predicted Functional Partners:
Prkacb
Protein kinase, cAMP dependent, catalytic, beta.
     
 0.908
Tdpoz3
TD and POZ domain containing 3.
    
   0.868
ENSMSIP00000011561
annotation not available
    
   0.868
Spop
Speckle-type BTB/POZ protein.
    
   0.868
Foxa2
Forkhead box A2.
    
 0.867
Prkaca
Protein kinase, cAMP dependent, catalytic, alpha.
     
 0.866
ENSMSIP00000025159
annotation not available
     
 0.866
Foxo1
Forkhead box O1.
    
 0.844
Mafa
V-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian).
    
 0.844
Gck
Glucokinase.
     
 0.821
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.