STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gin1Gypsy retrotransposon integrase 1. (518 aa)    
Predicted Functional Partners:
Fancm
Fanconi anemia, complementation group M.
    
 0.965
Ino80d
INO80 complex subunit D.
    
 0.680
ENSMSIP00000010714
annotation not available
    
 
 0.625
Fam110b
Family with sequence similarity 110, member B.
      
 0.612
Dhx8
DEAH (Asp-Glu-Ala-His) box polypeptide 8.
      
 0.612
Rtl4
Retrotransposon Gag like 4.
      
 0.604
Bud31
BUD31 homolog.
      
 0.595
ENSMSIP00000015787
annotation not available
     
 0.568
Efcab2
EF-hand calcium binding domain 2.
    
 
 0.557
ENSMSIP00000004201
annotation not available
    
 0.552
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.