STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Otol1Otolin 1. (482 aa)    
Predicted Functional Partners:
Col4a4
Collagen, type IV, alpha 4.
  
  
 
0.841
Col10a1
Collagen, type X, alpha 1.
  
  
 
0.721
Col4a2
Collagen, type IV, alpha 2.
  
  
 
0.718
ENSMSIP00000017479
annotation not available
  
  
 
0.709
Otogl
Otogelin-like.
   
  
 0.623
Oc90
Otoconin 90.
      
 0.617
Tecta
Tectorin alpha.
      
 0.617
Otog
Otogelin.
   
  
 0.612
Tectb
Tectorin beta.
      
 0.601
Sparcl1
SPARC-like 1.
      
 0.547
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.