STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nup43Nucleoporin 43. (380 aa)    
Predicted Functional Partners:
Nup98
Nucleoporin 98.
    
 0.999
Nup133
Nucleoporin 133.
   
 0.999
Seh1l
SEH1-like (S. cerevisiae.
   
 0.999
Nup107
Nucleoporin 107.
   
 0.999
Sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
   
 0.999
Nup160
Nucleoporin 160.
   
 0.999
Nup85
Nucleoporin 85.
   
 0.999
Nup37
Nucleoporin 37.
   
 0.999
Nup93
Nucleoporin 93.
   
 0.997
Ahctf1
AT hook containing transcription factor 1.
    
 0.997
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.