STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PcloPiccolo (presynaptic cytomatrix protein). (5048 aa)    
Predicted Functional Partners:
Rapgef4
Rap guanine nucleotide exchange factor (GEF) 4.
    
 0.952
Rab3a
RAB3A, member RAS oncogene family.
     
 0.941
Unc79
Unc-79 homolog.
   
 0.912
Rims2
Regulating synaptic membrane exocytosis 2.
    
0.882
Ak9
Adenylate kinase 9.
    
  0.806
Bsn
Bassoon.
  
0.762
ENSMSIP00000035691
annotation not available
    
  0.728
Leo1
Leo1, Paf1/RNA polymerase II complex component.
    
  0.728
Rims1
Regulating synaptic membrane exocytosis 1.
    
0.691
ENSMSIP00000038338
annotation not available
   
 
 0.691
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.