STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Myod1Myogenic differentiation 1. (318 aa)    
Predicted Functional Partners:
Tcf3
Transcription factor 3.
    
 0.991
Tcf4
Transcription factor 4.
    
 0.980
Tbp
TATA box binding protein.
    
 0.967
Tcf12
Transcription factor 12.
    
 0.960
ENSMSIP00000034140
annotation not available
    
 
 0.956
Smad3
SMAD family member 3.
   
 
 0.945
Fbxo32
F-box protein 32.
    
 
 0.945
ENSMSIP00000024269
annotation not available
    
 
 0.922
Kat2b
K(lysine) acetyltransferase 2B.
    
 
 0.922
Smarcd3
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.
    
 
 0.918
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.