STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lhx3LIM homeobox protein 3. (402 aa)    
Predicted Functional Partners:
Isl1
ISL1 transcription factor, LIM/homeodomain.
   
0.998
Ldb1
LIM domain binding 1.
    
 0.988
Isl2
Insulin related protein 2 (islet 2).
   
0.971
Ldb2
LIM domain binding 2.
    
 0.903
Alx3
Aristaless-like homeobox 3.
    
0.901
Ssbp3
Single-stranded DNA binding protein 3.
    
 
 0.828
ENSMSIP00000031858
annotation not available
    
 
 0.703
ENSMSIP00000037076
annotation not available
    
 
 0.703
Ssbp4
Single stranded DNA binding protein 4.
    
 
 0.694
Pou1f1
POU domain, class 1, transcription factor 1.
   
 
 0.667
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.