STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fam120aFamily with sequence similarity 120, member A. (1039 aa)    
Predicted Functional Partners:
Syncrip
Synaptotagmin binding, cytoplasmic RNA interacting protein.
    
 
 0.733
Zmynd12
Zinc finger, MYND domain containing 12.
      
 0.604
Ttll2
Tubulin tyrosine ligase-like family, member 2.
      
 0.527
Upf1
UPF1 regulator of nonsense transcripts homolog (yeast).
    
 
 0.518
Il13ra2
Interleukin 13 receptor, alpha 2.
      
 0.505
ENSMSIP00000014650
annotation not available
      
 0.502
Suco
SUN domain containing ossification factor.
      
 0.497
Emc10
ER membrane protein complex subunit 10.
      
 0.478
Tram1
Translocating chain-associating membrane protein 1.
      
 0.470
Pabpc4
poly(A) binding protein, cytoplasmic 4.
    
 
 0.452
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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