STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vti1aVesicle transport through interaction with t-SNAREs 1A. (224 aa)    
Predicted Functional Partners:
Stx6
Syntaxin 6.
    
 0.999
Vamp4
Vesicle-associated membrane protein 4.
   
 0.999
Stx16
Syntaxin 16.
   
 0.999
Stx5a
Syntaxin 5A.
    
 0.999
ENSMSIP00000022717
annotation not available
    
 0.998
Stx12
Syntaxin 12.
   
 0.997
Vamp8
Vesicle-associated membrane protein 8.
   
 0.995
Vps45
Vacuolar protein sorting 45.
   
 0.994
Stx8
Syntaxin 8.
    
 0.994
ENSMSIP00000013008
annotation not available
   
 0.994
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.