STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cmc4C-x(9)-C motif containing 4. (68 aa)    
Predicted Functional Partners:
Mysm1
Myb-like, SWIRM and MPN domains 1.
    
 0.982
ENSMSIP00000009114
annotation not available
    
 0.882
Uty
Ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome.
    
 0.882
Kdm6a
Lysine (K)-specific demethylase 6A.
    
 0.882
Kdm6b
KDM1 lysine (K)-specific demethylase 6B.
    
 0.882
Ssrp1
Structure specific recognition protein 1.
    
 0.865
ENSMSIP00000020569
annotation not available
    
  0.842
Polr2b
Polymerase (RNA) II (DNA directed) polypeptide B.
    
  0.839
ENSMSIP00000004742
annotation not available
    
 0.834
Supt16
SPT16, facilitates chromatin remodeling subunit.
   
 0.834
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.