STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSMSIP00000038509annotation not available (230 aa)    
Predicted Functional Partners:
ENSMSIP00000006658
annotation not available
   
0.999
Lsm8
LSM8 homolog, U6 small nuclear RNA associated.
   
 0.999
ENSMSIP00000032508
annotation not available
   
 0.999
Lsm3
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.998
Lsm1
LSM1 homolog, mRNA degradation associated.
   
 0.998
Patl1
Protein associated with topoisomerase II homolog 1 (yeast).
    
 0.997
Sart3
Squamous cell carcinoma antigen recognized by T cells 3.
    
 0.996
ENSMSIP00000026665
annotation not available
   
 0.996
Lsm6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.996
Lsm5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.995
Your Current Organism:
Mus spicilegus
NCBI taxonomy Id: 10103
Other names: M. spicilegus, Mus hortulanus, mound-building mouse, steppe mouse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.