STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0J61_11366Uncharacterized protein. (180 aa)    
Predicted Functional Partners:
A0J61_02394
Phorbol-ester/DAG-type domain-containing protein.
    
 0.859
NSP1
Nucleoporin NSP1.
    
 0.758
RBBP5
Retinoblastoma-binding protein 5.
    
 0.739
ash2
Set1 complex component ash2.
    
 0.734
A0J61_04027
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.705
A0J61_05256
Uncharacterized protein.
    
 0.703
ATG1
Serine/threonine-protein kinase ATG1; Belongs to the protein kinase superfamily.
    
 0.700
SEC13
Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.
    
 0.697
SEH1L
Nucleoporin SEH1; Belongs to the WD repeat SEC13 family.
    
 0.686
set1
Histone-lysine N-methyltransferase, H3 lysine-4 specific.
   
 0.652
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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