STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DUS1LtRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like protein. (272 aa)    
Predicted Functional Partners:
trm11
tRNA (Guanine(10)-N2)-methyltransferase.
   
  
 0.650
proS
Proline--tRNA ligase.
  
 
 0.572
prs1
Putative proline--tRNA ligase C19C7.06.
  
 
 0.572
SPBC3B8.09
Uncharacterized protein C3B8.09.
   
    0.565
A0J61_11376
U3 small nucleolar RNA-associated protein 21.
   
   0.557
A0J61_02439
U3 small nucleolar RNA-associated protein 21.
   
   0.557
bysl
Bystin.
   
    0.543
RPF1
Ribosome production factor 1.
   
    0.540
IMP4
U3 small nucleolar ribonucleoprotein IMP4.
   
    0.535
A0J61_02522
CBF domain-containing protein.
   
    0.535
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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