STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cc2d1aCoiled-coil and C2 domain-containing protein 1A. (849 aa)    
Predicted Functional Partners:
snf7
Vacuolar-sorting protein snf7.
    
 0.959
chmp3
Charged multivesicular body protein 3.
     
 0.774
chmp2a2
Charged multivesicular body protein 2a 2.
     
 0.773
Ist1
Protein IST1.
     
 0.770
CHMP6
Charged multivesicular body protein 6.
     
 0.768
A0J61_04890
Uncharacterized protein.
     
 0.669
chmp7
Charged multivesicular body protein 7.
     
 0.669
VPS4_1
Vacuolar protein sorting-associated protein 4; Belongs to the AAA ATPase family.
     
 0.656
VPS4_0
Vacuolar protein sorting-associated protein 4; Belongs to the AAA ATPase family.
     
 0.656
SPBP8B7.31
Putative magnesium-dependent phosphatase P8B7.31.
    
 0.640
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.