STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0J61_09823Uncharacterized protein. (93 aa)    
Predicted Functional Partners:
EXOSC8
Exosome complex component RRP43.
    
  0.855
exo2
5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.
    
 0.849
dcp1
mRNA-decapping enzyme subunit 1.
    
 0.718
dcp2
mRNA decapping complex subunit 2.
   
 0.704
rad24
DNA damage checkpoint protein rad24; Belongs to the 14-3-3 family.
   
  0.702
fttB
14-3-3-like protein; Belongs to the 14-3-3 family.
   
  0.702
BMH1
Protein BMH1; Belongs to the 14-3-3 family.
   
  0.702
A0J61_09306
Uncharacterized protein.
   
 0.693
A0J61_06901
Uncharacterized protein.
   
 0.693
Exosc4
Exosome complex component RRP41.
    
  0.658
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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