STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0J61_09803Uncharacterized protein. (468 aa)    
Predicted Functional Partners:
sconC
E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.
    
  0.686
Chn1_0
N-chimaerin.
   
 0.644
rhlG_1
Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase.
     
 0.625
A0J61_09457
Uncharacterized protein.
     
 0.556
sec9
Protein transport protein sec9.
   
 
  0.548
CDC42BPA
Serine/threonine-protein kinase MRCK alpha.
   
 
 0.548
sepA_3
Cytokinesis protein sepA.
   
 
  0.535
DIAPH1
Protein diaphanous 1.
   
 
  0.535
A0J61_06211
GBD/FH3 domain-containing protein.
   
 
  0.535
IQGAP1_0
Ras GTPase-activating-like protein IQGAP1.
   
 
  0.535
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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