STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0J61_08886WW domain-containing protein. (209 aa)    
Predicted Functional Partners:
PLA2G4A
Lysophospholipase.
     
 0.700
crb3
Pre-rRNA-processing protein crb3/ipi3.
    
 0.677
cdc17
DNA ligase.
    
 0.642
pot1
Protection of telomeres protein 1.
    
  0.629
Gpld1
Phosphatidylinositol-glycan-specific phospholipase D.
    
 0.629
A0J61_08114
Uncharacterized protein.
    
 0.611
RPS27A
Ubiquitin-40S ribosomal protein S27a.
    
 0.609
taf6
Transcription initiation factor TFIID subunit 6.
    
 0.594
A0J61_07778
Fe2OG dioxygenase domain-containing protein.
   
 0.585
spt3
SAGA complex subunit spt3.
    
 0.584
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.