STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZCCHC8Zinc finger CCHC domain-containing protein 8. (382 aa)    
Predicted Functional Partners:
mtr4
ATP-dependent RNA helicase mtr4.
    
 
 0.968
exosc3
Putative exosome complex component rrp40.
   
 
 0.844
EXOSC8
Exosome complex component RRP43.
    
 
 0.808
EXOSC7
Exosome complex component RRP42.
   
 
 0.780
Cbp20
Nuclear cap-binding protein subunit 2.
    
 
 0.725
EXOSC1
Exosome complex component CSL4.
    
 
 0.656
Exosc5
Exosome complex component RRP46.
    
 
 0.629
A0J61_07961
Uncharacterized protein.
    
 
 0.625
A0J61_05539
Importin N-terminal domain-containing protein.
    
 
 0.625
A0J61_02021
Importin N-terminal domain-containing protein.
    
 
 0.625
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.