STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0J61_08375PAS domain-containing protein. (269 aa)    
Predicted Functional Partners:
A0J61_05422
Uncharacterized protein.
  
 
0.971
A0J61_03344
BHLH domain-containing protein.
    
 0.970
Tceb1
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
    
 0.951
A0J61_05503
Uncharacterized protein.
    
 0.949
culA_1
Cullin-1; Belongs to the cullin family.
    
 0.886
Cul2
Cullin-2; Belongs to the cullin family.
    
 0.886
kdm8
Lysine-specific demethylase 8.
    
 0.878
A0J61_09938
Uncharacterized protein.
    
 0.818
A0J61_08607
Uncharacterized protein.
    
 0.818
A0J61_03887
Uncharacterized protein.
    
 0.818
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.