STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDA_4Chitin deacetylase. (409 aa)    
Predicted Functional Partners:
ykoW
Signaling protein YkoW.
    
 0.810
MRE11A
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
 0.686
Gpld1
Phosphatidylinositol-glycan-specific phospholipase D.
    
 0.649
aps-2
AP-2 complex subunit sigma.
    
  0.638
apm2
AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.
    
  0.638
rrn7
RNA polymerase I-specific transcription initiation factor rrn7.
    
  0.614
A0J61_10583
Uncharacterized protein.
    
 0.610
A0J61_10370
Uncharacterized protein.
    
 0.610
SLA1
Actin cytoskeleton-regulatory complex protein SLA1.
    
 0.610
A0J61_07399
Uncharacterized protein.
    
 0.610
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.