STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0J61_07462Uncharacterized protein. (227 aa)    
Predicted Functional Partners:
rrn7
RNA polymerase I-specific transcription initiation factor rrn7.
    
 0.724
sde2
Protein SDE2.
   
 0.656
TMC1
AN1-type zinc finger protein TMC1.
   
 0.656
ATG7
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 and ATG8 for its conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Autophagy is essential for maintenance of amino acid levels and protein synthesis under nitrogen starvation. Required for selective autophagic degradation of the nucleus (nucleophagy) as well as for mitophagy wh [...]
    
 0.573
RPS27A
Ubiquitin-40S ribosomal protein S27a.
   
 0.569
uba3
NEDD8-activating enzyme E1 catalytic subunit.
    
 0.565
DSK2
Ubiquitin domain-containing protein DSK2.
   
 0.519
DSK2B
Ubiquitin domain-containing protein DSK2b.
   
 0.519
BOI2
Protein BOI2.
   
 0.519
A0J61_02360
Uncharacterized protein.
   
 0.519
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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