STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
unc-47_0Vesicular GABA transporter. (411 aa)    
Predicted Functional Partners:
TRAF7
E3 ubiquitin-protein ligase TRAF7.
    
 0.698
LAMTOR2
Ragulator complex protein LAMTOR2.
    
 0.697
Traf5
TNF receptor-associated factor 5.
    
 0.594
COP1
E3 ubiquitin-protein ligase COP1.
    
 0.594
VhaAC39-1
V-type proton ATPase subunit; Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. The active enzyme consists of a catalytic V1 domain attached to an integral membrane V0 proton pore complex. This subunit is a non-integral membrane component of the membrane pore domain and is required for proper assembly of the V0 sector. Might be involved in the regulated assembly of V1 subunits onto the membrane sector or alternatively may prevent the passage of protons through V0 pores; Belongs to the V-ATPase V0D/AC39 subunit family.
    
 0.594
VMA2
Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.
    
  0.585
NUDT12
Peroxisomal NADH pyrophosphatase NUDT12.
    
 0.576
Rraga_1
Ras-related GTP-binding protein A.
   
 0.556
Rraga_0
Ras-related GTP-binding protein A.
   
 0.556
wat1
WD repeat-containing protein wat1.
    
  0.540
Your Current Organism:
Choanephora cucurbitarum
NCBI taxonomy Id: 101091
Other names: C. cucurbitarum, Choanephora infundibulifera f. cucurbitarum
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